SPM2 Gem 2: Making your own MINC SPM2 templates

Subject: Re: FDP template — SPM99 version
From: John Ashburner <john@FIL.ION.UCL.AC.UK>
Date: Thu, 27 Mar 2003 16:53:03 +0000 (11:53 EST)

> Those who use the FDG template should know that is was created for SPM99,
> and is thus in the standard orientation for that program, which is the
> opposite from that used in SPM2b.
> I believe that John Ashburner has agreed to convert to MINC format for use
> in SPM2b.

Converting from SPM99 to SPM2b templates can be pretty easy. In this case, the
command was (all one line):

rawtominc -transverse -short -signed -range 0 32767 -real_range 0 32767
-orange 0 32767 -xstep 2 -ystep 2 -zstep 2 -xstart -90 -ystart -126
-zstart -72 -xdircos 1 0 0 -ydircos 0 1 0 -zdircos 0 0 1 -pet FDG.mnc
91 109 91 < template_FDG_PET_OSEM_seg.img

The converted template can be downloaded from:

rawtominc can be obtained from:

Note that the simple conversion only applies to SPM99 templates in
Analyze format. If you do the same with SPM2b generated templates,
then you will need to do a left-right flip to them first.

Best regards,

One thought on “SPM2 Gem 2: Making your own MINC SPM2 templates

Leave a Reply

Fill in your details below or click an icon to log in:

WordPress.com Logo

You are commenting using your WordPress.com account. Log Out /  Change )

Facebook photo

You are commenting using your Facebook account. Log Out /  Change )

Connecting to %s