Flame without 1st level directories – copes only.

Follow-up to Flame without 1st level directories from the NISOx blog (formerly Neuroimaging Statistics Tips & Tools)

My earlier post described how to get the basic FEAT second-level results when you just have a stack of COPE and VARCOPE images. In fact, you don’t even need the VARCOPE images.

If you just have the COPE images, in the flameo call omit --vc=4dvarcope (which you don’t have) and replace the --runmode=flame1 with --runmode=ols and you should be all set.